Aevol

Description

Aevol is a digital genetics model: populations of digital organisms are subjected to a process of selection and variation, which creates a Darwinian dynamics.

By modifying the characteristics of selection (e.g. population size, type of environment, environmental variations) or variation (e.g. mutation rates, chromosomal rearrangement rates, types of rearrangements, horizontal transfer), one can study experimentally the impact of these parameters on the structure of the evolved organisms. In particular, since Aevol integrates a precise and realistic model of the genome, it allows for the study of structural variations of the genome (e.g. number of genes, synteny, proportion of coding sequences).

The simulation platform comes along with a set of tools for analysing phylogenies and measuring many characteristics of the organisms and populations along evolution.

Usage

This is only a very basic demo of the platform that automatically creates and run a single simulation from the provided parameter file (that must be called param.in).

For more please visit www.aevol.fr

In input :

param.in

In output :

18/07/2016 : Version 5.0,
18/07/2016 : Version 1.0, initial version

How to use our REST API :

Think to check your private token in your account first. You can find more detail in our documentation tab.

This app id is : 131

This curl command will create a job, and return your job url, and also the average execution time

files and/or dataset are optionnal, think to remove them if not wanted

curl -H 'Authorization: Token token=<your_private_token>' -X POST
-F job[webapp_id]=131
-F job[param]=""
-F job[queue]=standard
-F files[0]=@test.txt
-F files[1]=@test2.csv
-F job[file_url]=<my_file_url>
-F job[dataset]=<my_dataset_name> https://allgo.inria.fr/api/v1/jobs

Then, check your job to get the url files with :

curl -H 'Authorization: Token token=<your_private_token>' -X GET https://allgo.inria.fr/api/v1/jobs/<job_id>