Gatb-compiler

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Owner:
Guest   charles.deltel@inria.fr

Provides a GATB-Core environment to easily compile, run and test GATB code snippets.

Please log in to perform a job with this app.


In input :


In output :

19/06/2017 : Version 1.0, fix data-file-mapper.txt: replace fastq_small_N by fq_small_N

How to use our REST API :

Think to check your private token in your account first. You can find more detail in our documentation tab.

This app id is : 151

This curl command will create a job, and return your job url, and also the average execution time

files and/or dataset are optionnal, think to remove them if not wanted 
curl -H 'Authorization: Token token=<your_private_token>' -X POST
-F job[webapp_id]=151
-F job[param]=""
-F job[queue]=standard
-F files[0]=@test.txt
-F files[1]=@test2.csv
-F job[file_url]=<my_file_url>
-F job[dataset]=<my_dataset_name> https://allgo.inria.fr/api/v1/jobs

Then, check your job to get the url files with :

curl -H 'Authorization: Token token=<your_private_token>' -X GET https://allgo.inria.fr/api/v1/jobs/<job_id>