GATB-Minia-Pipeline is a de novo assembly pipeline for llumina data. It can assemble genomes and metagenomes. The pipeline consists of: Bloocoo (error correction), Minia (contigs assembly), BESST (scaffolding). See https://github.com/GATB/gatb-minia-pipeline for additional information.
Please log in to perform a job with this app.
In input :
In output :
06/02/2019 : Version 1.0, Test en enlevant /tmp
This app id is : 122
This curl command will create a job, and return your job url, and also the average execution time
files and/or dataset are optionnal, think to remove them if not wantedcurl -H 'Authorization: Token token=<your_private_token>' -X POST -F job[webapp_id]=122 -F job[param]="" -F job[queue]=standard -F files[0]=@test.txt -F files[1]=@test2.csv -F job[file_url]=<my_file_url> -F job[dataset]=<my_dataset_name> https://allgo.inria.fr/api/v1/jobs
Then, check your job to get the url files with :
curl -H 'Authorization: Token token=<your_private_token>' -X GET https://allgo.inria.fr/api/v1/jobs/<job_id>
